Package: splitGraph 0.3.0

splitGraph: Dataset Dependency Graphs for Leakage-Aware Evaluation

Represent biomedical dataset structure as typed dependency graphs so that sample provenance, repeated-measure structure, study design, batch effects, and temporal relationships are explicit and inspectable. Validates dataset structure, detects sample-level overlap, derives deterministic split constraints, and produces a tool-agnostic split specification for leakage-aware evaluation workflows.

Authors:Selcuk Korkmaz [aut, cre]

splitGraph_0.3.0.tar.gz
splitGraph_0.3.0.zip(r-4.7)splitGraph_0.3.0.zip(r-4.6)splitGraph_0.3.0.zip(r-4.5)
splitGraph_0.3.0.tgz(r-4.6-any)splitGraph_0.3.0.tgz(r-4.5-any)
splitGraph_0.3.0.tar.gz(r-4.7-any)splitGraph_0.3.0.tar.gz(r-4.6-any)
splitGraph_0.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
splitGraph/json (API)

# Install 'splitGraph' in R:
install.packages('splitGraph', repos = c('https://selcukorkmaz.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/selcukorkmaz/splitgraph/issues

On CRAN:

Conda:

3.40 score 1 stars 7 scripts 428 downloads 44 exports 11 dependencies

Last updated from:6998507b77. Checks:7 WARNING, 1 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64WARNING149
source / vignettesERROR202
linux-release-x86_64WARNING165
macos-release-arm64WARNING101
macos-oldrel-arm64WARNING108
windows-develWARNING94
windows-releaseWARNING105
windows-oldrelWARNING94
wasm-releaseOK119

Exports:as_igraphas_split_specbuild_dependency_graphbuild_depgraphcreate_edgescreate_nodesdependency_constraintdependency_graphdepgraph_validation_reportderive_split_constraintsdetect_dependency_componentsdetect_shared_dependenciesgraph_edge_setgraph_from_metadatagraph_node_setgraph_query_resultgrouping_vectoringest_metadataleakage_risk_summarymigrate_dependency_graph_jsonmigrate_split_spec_jsonnew_depgraphnew_depgraph_edgesnew_depgraph_nodesquery_edge_typequery_neighborsquery_node_typequery_pathsquery_shortest_pathsread_dependency_graphread_split_specrelatedness_edges_from_kinshipspatial_edges_from_coordssplit_constraintsplit_specsplit_spec_validationsummarize_leakage_risksvalidate_depgraphvalidate_graphvalidate_graph_jsonvalidate_split_specvalidate_split_spec_jsonwrite_dependency_graphwrite_split_spec

Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMatrixpkgconfigrlangvctrs

Readme and manuals

Help Manual

Help pageTopics
Translate splitGraph Constraints into Stable Split Specificationsas_split_spec summarize_leakage_risks validate_split_spec
Assemble and Validate Dependency Graphsas_igraph build_dependency_graph build_depgraph validate_depgraph validate_graph
Create Canonical Node and Edge Tablescreate_edges create_nodes
Validation Report Object for splitGraph Graphsdepgraph_validation_report leakage_risk_summary split_spec split_spec_validation
Derive Split Constraints from Dependency Graphsderive_split_constraints grouping_vector
Build a Dependency Graph Directly from a Metadata Tablegraph_from_metadata
Construct Core splitGraph S3 Objectsdependency_constraint dependency_graph graph_edge_set graph_node_set graph_query_result new_depgraph new_depgraph_edges new_depgraph_nodes split_constraint
Standardize Sample Metadataingest_metadata
Upgrade Serialized splitGraph JSON to the Current Schema Versionmigrate_dependency_graph_json migrate_json migrate_split_spec_json
Build Pairwise Leakage Edges from Continuous Similaritypairwise_edges relatedness_edges_from_kinship spatial_edges_from_coords
Query Dependency Graph Structuredetect_dependency_components detect_shared_dependencies query_edge_type query_neighbors query_node_type query_paths query_shortest_paths
Validate Serialized splitGraph JSON Against the Shipped Schemavalidate_graph_json validate_json validate_split_spec_json
Serialize a Dependency Graph to JSONread_dependency_graph write_dependency_graph
Serialize a Split Specification to JSONread_split_spec write_split_spec